Repositories list

• microservice-repository-template

  Public template
  A template for Python-based microservice repositories with continuous update delivery.

  Python

  •

  Apache License 2.0

  •2•1•0•0•Updated Mar 24, 2026Mar 24, 2026

• epic-docs

  Public
  Documentation and plans for service development milestones

  Shell

  •

  Apache License 2.0

  •1•1•0•2•Updated Mar 24, 2026Mar 24, 2026

• data-portal

  Public
  GHGA Data Portal v2

  TypeScript

  •

  Other

  •0•0•0•1•Updated Mar 24, 2026Mar 24, 2026

• docs.ghga.de

  Public
  GHGA User Documentation

  Python

  •

  Apache License 2.0

  •2•1•1•5•Updated Mar 24, 2026Mar 24, 2026

• gh-action-fetch-tag

  Public
  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

• gh-action-ci

  Public
  Common steps executed within CI pipelines of GHGA.

  Dockerfile

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

• em-transformation-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•2•Updated Mar 24, 2026Mar 24, 2026

• gh-action-common

  Public
  Apache License 2.0

  •0•0•0•1•Updated Mar 24, 2026Mar 24, 2026

• AQuA

  Public
  Automated Quality Assesment nextflow pipeline for GHGA datasets

  quality-control

  quality-control

  Nextflow

  •

  MIT License

  •2•0•7•0•Updated Mar 24, 2026Mar 24, 2026

• work-package-service

  Public
  Service that handles work packages for the CLI client

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

• ghga-connector

  Public
  CLI - Client to perform up- and download operations to and from a local ghga instance

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

• access-request-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

• notification-orchestration-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

• charts

  Public
  Go Template

  •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

• ghga-registry-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•1•Updated Mar 20, 2026Mar 20, 2026

• datahub-file-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

• upload-orchestration-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

• file-services-backend

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•1•Updated Mar 18, 2026Mar 18, 2026

• hexkit

  Public
  A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.

  Python

  •

  Apache License 2.0

  •0•5•0•0•Updated Mar 17, 2026Mar 17, 2026

• dataset-information-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

• ghga-datasteward-kit

  Public
  GHGA-internal scripts to be used by data stewards.

  Python

  •

  Apache License 2.0

  •0•4•0•0•Updated Mar 13, 2026Mar 13, 2026

• state-management-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

• auth-service

  Public
  Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol

  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Mar 13, 2026Mar 13, 2026

• ghga-event-schemas

  Public
  A package that collects schemas used for messaging between GHGA service.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

• nf-aceseq

  Public
  a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow

  somatic-variantsacesomatic-mutations+ 5

  somatic-variantsacesomatic-mutationssvdkfzghgaodcface-seq

  R

  •

  MIT License

  •0•2•6•0•Updated Mar 6, 2026Mar 6, 2026

• metldata

  Public
  A framework for handling metadata based on ETL, CQRS, and event sourcing.

  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Mar 2, 2026Mar 2, 2026

• schemapack

  Public
  Make your JSON Schemas sociable and create linked data model.

  Python

  •

  Apache License 2.0

  •0•2•3•0•Updated Feb 16, 2026Feb 16, 2026

• nf-platypusindelcalling

  Public
  This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ

  workflowpipelineannotation+ 11

  workflowpipelineannotationnextflowsomatic-variantsannotationsvariant-callingsomatic-mutationsplatypusnextflow-pipeline+ 4

  Python

  •

  MIT License

  •0•2•4•1•Updated Feb 10, 2026Feb 10, 2026

• nf-snvcalling

  Public
  a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

  somatic-variantssomatic-mutationssnv+ 5

  somatic-variantssomatic-mutationssnvsnv-annotationdkfzghgasnv-callodcf

  Python

  •

  MIT License

  •0•3•7•1•Updated Feb 10, 2026Feb 10, 2026

• well-known-value-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 9, 2026Feb 9, 2026